Genetic diversity study in Napier grass collections and progeny plants

Version 4.0

Jones, Chris; Muktar, Meki; Gari, Abel; Hanson, Jean; Negawo, Alemayehu Teressa; Domelevo Entfellner, Jean-Baka; Lee, Ki-won; Habte, Ermias, 2020, "Genetic diversity study in Napier grass collections and progeny plants", https://hdl.handle.net/20.500.11766.1/FK2/X9FIXB, MELDATA, V4

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Description	Genetic diversity study in Napier grass collections and progeny plants. The dataset contains genome-wide sequence tags, in FASTQ file format, generated from the genotyping of 258 Napier grass accessions on the DArTseq genotyping-by-sequencing platform. Of these, sequence tags representing 105 Napier grass accessions have been published previously (see doi.org:10.1038/s41598-019-43406-0). The remaining 153 accessions are Napier grass progeny plants raised from seeds of 13 mother plants from the ILRI collection.
Subject	Agricultural Sciences
Keyword	genebanks, feed crops, collections, pennisetum purpureum, dna sequences, cenchrus purpureus
Related Publication	Muktar, M.S., Teshome, A., Hanson, J. et al. Genotyping by sequencing provides new insights into the diversity of Napier grass (Cenchrus purpureus) and reveals variation in genome-wide LD patterns between collections. Sci Rep 9, 6936 (2019). doi: 10.1038/s41598-019-43406-0
Notes	Type: Dataset; Sub-type(s): Other (Genomic or Genetics data)
License/Data Use Agreement	Custom Dataset Terms

	1 File
	The_Napier_84acc_old.zip ZIP Archive - 3.4 MB Published Aug 14, 2023 8 Downloads MD5: fa25d410be43cae4ff8dcdcb57eb1da0	Access File File Access Public Download Options ZIP Archive Download Metadata Data File Citation EndNote XML RIS BibTeX

Citation Metadata

Persistent Identifier	hdl:20.500.11766.1/FK2/X9FIXB
Publication Date	2023-02-03
Title	Genetic diversity study in Napier grass collections and progeny plants
Other Identifier	MEL: 36811 Other: https://data.ilri.org/portal/dataset/geneticdiversitynapier Other: https://hpc.ilri.cgiar.org/~mshehabu/napier-grass-GBS-data-2019/
Author	Jones, Chris (International Livestock Research Institute - ILRI) Muktar, Meki (International Livestock Research Institute - ILRI) Gari, Abel (International Livestock Research Institute - ILRI) Hanson, Jean (International Livestock Research Institute - ILRI) Negawo, Alemayehu Teressa (International Livestock Research Institute - ILRI) Domelevo Entfellner, Jean-Baka (Biosciences Eastern and Central Africa - BeCA) Lee, Ki-won (Rural Development Administration - RDA KR) Habte, Ermias (International Livestock Research Institute - ILRI)
Point of Contact	Use email button above to contact. Muktar, Meki (International Livestock Research Institute - ILRI)
Description	Genetic diversity study in Napier grass collections and progeny plants. The dataset contains genome-wide sequence tags, in FASTQ file format, generated from the genotyping of 258 Napier grass accessions on the DArTseq genotyping-by-sequencing platform. Of these, sequence tags representing 105 Napier grass accessions have been published previously (see doi.org:10.1038/s41598-019-43406-0). The remaining 153 accessions are Napier grass progeny plants raised from seeds of 13 mother plants from the ILRI collection.
Subject	Agricultural Sciences
Keyword	genebanks (AGROVOC) http://aims.fao.org/aos/agrovoc/c_11116 feed crops (AGROVOC) http://aims.fao.org/aos/agrovoc/c_2829 collections (AGROVOC) http://aims.fao.org/aos/agrovoc/c_1756 pennisetum purpureum (AGROVOC) http://aims.fao.org/aos/agrovoc/c_5677 dna sequences (AGROVOC) http://aims.fao.org/aos/agrovoc/c_27812 cenchrus purpureus
Related Publication	Muktar, M.S., Teshome, A., Hanson, J. et al. Genotyping by sequencing provides new insights into the diversity of Napier grass (Cenchrus purpureus) and reveals variation in genome-wide LD patterns between collections. Sci Rep 9, 6936 (2019). doi: 10.1038/s41598-019-43406-0 https://doi.org/10.1038/s41598-019-43406-0
Notes	Type: Dataset; Sub-type(s): Other (Genomic or Genetics data)
Language	English
Producer	International Livestock Research Institute (ILRI) http://www.ilri.org/
Production Date	2020-03-04
Contributor	Data Curator : Chris Jones (International Livestock Research Institute - ILRI) Data Curator : Meki Shehabu Muktar (International Livestock Research Institute - ILRI) Funder : CGIAR Research Program on Livestock Agri-Food Systems - Livestock Project Manager : Chris Jones (International Livestock Research Institute - ILRI)
Deposit Date	2024-06-21
Time Period	Start Date: 2017-01-01 ; End Date: 2020-03-04

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Geographic Coverage	Ethiopia, Bishoftu Ethiopia, Ziway Kenya

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Sampling Procedure	DNA extraction

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